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Here you can see the gene and the variant being analyzed.
We summarize a large amount of clinical data on this gene here. Links are added where available to source information.
Prediction information is summarized here, the percentage shows the likelihood that the variant is pathogenic.
Agreement is a measure (out of 5 stars) of how much our predictors agree between each other. When predictors agree, the prediction is more likely to be correct.
Data quality is a measure (out of 5 stars) of how good the underlying data for this prediction is. This is an assessment of the depth of our alignments and the number of structures available, among other factors.
This table shows literature for this exact position and protein, if it is available.
This table shows literature for this position in homologous proteins, if it is available.
This is a description of our prediction.
This plot illustrates the agreement between different classifiers. If the prediction distributions align on one side it indicates increased certainty in the prediction.
This describes the data quality for this position.
Here are the four factors that contributed most to the prediction. Factors that contributed to a benign prediction are colored blue, pathogenic factors are colored red.
This plot shows all the factors for prediction. Factors that contributed to a benign prediction are colored blue, pathogenic factors are colored red.
This plot shows the conservation on this position.
Here the conservation statistics are described.
This is an interactive structure display. Feel free to play with it after the tour!
This is a list of interactions we found for this position.
Here you can download scenes for different molecular viewers, so you can analyze the structure in more detail.
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BRAF
ENST00000646891 | p.Val600Glu
Summary
BRAF - ENST00000646891
Gene | BRAF -
ENSG00000157764
| ENSP00000493543
| ENST00000646891 Ensembl | RefSeq | UniProt |
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Location | GRCh38 7:140730665-140924928 Ensembl UCSC | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Description | B-Raf proto-oncogene, serine/threonine kinase Protein kinase involved in the transduction of mitogenic signals from the cell membrane to the nucleus. May play a role in the postsynaptic responses of hippocampal neuron. Phosphorylates MAP2K1, and thereby contributes to the MAP kinase signal transduction pathway. {ECO:0000269|PubMed:21441910}.; |
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Condition(s) |
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Sequence |
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PDB and PDB position | 4e26 600 (Explore) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
gnomAD |
Exome Allele Frequency: 3.979941e-06 Genome Allele Frequency: None gnomAD |
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Pathogenicity |
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Older predictions |
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Literature
Helix prediction details
Prediction: pathogenic 94%
The Val600Glu mutation in the protein has been classified as pathogenic by our ensemble classifier system, with very high confidence. There is a 91% agreement between all subclassifiers.
Data quality
Data quality for this region is considered good. This means that enhanced, deep alignments are present and there is a variety of data for the algorithm to predict from.
Assistant summary
This is an automatically generated assessment, it is not reviewed by humans and only has partial access to the information contained in the report. Generating this may take some time.
Evolutionary pressure
Conservation
The wildtype was observed in 7.75% of the 156606 sequences analyzed. The variant type was observed in 11.48% of observed sequences.
This residue is involved in 5 Hydrophobic interactions.
Interaction statistics were calculated using advanced molecular optimization techniques and may not be visible in the plain PDB file. Please download the YASARA scene to explore the interactions in more detail.