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Here you can see the gene and the variant being analyzed.
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We summarize a large amount of clinical data on this gene here. Links are added where available to source information.
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Prediction information is summarized here, the percentage shows the likelihood that the variant is pathogenic.
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This is a description of our prediction.
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This plot illustrates the agreement between different classifiers. If the prediction distributions align on one side it indicates increased certainty in the prediction.
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This describes the data quality for this position.
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This plot shows the conservation on this position.
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Here the conservation statistics are described.
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This is an interactive structure display. Feel free to play with it after the tour!
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This is a list of interactions we found for this position.
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Here you can download scenes for different molecular viewers, so you can analyze the structure in more detail.
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E3 ubiquitin-protein ligase that specifically mediates the formation of 'Lys-6'-linked polyubiquitin chains and plays a central role in DNA repair by facilitating cellular responses to DNA damage. It is unclear whether it also mediates the formation of other types of polyubiquitin chains. The E3 ubiquitin-protein ligase activity is required for its tumor suppressor function. The BRCA1-BARD1 heterodimer coordinates a diverse range of cellular pathways such as DNA damage repair, ubiquitination and transcriptional regulation to maintain genomic stability. Regulates centrosomal microtubule nucleation. Required for normal cell cycle progression from G2 to mitosis. Required for appropriate cell cycle arrests after ionizing irradiation in both the S-phase and the G2 phase of the cell cycle. Involved in transcriptional regulation of P21 in response to DNA damage. Required for FANCD2 targeting to sites of DNA damage. May function as a transcriptional regulator. Inhibits lipid synthesis by binding to inactive phosphorylated ACACA and preventing its dephosphorylation. Contributes to homologous recombination repair (HRR) via its direct interaction with PALB2, fine-tunes recombinational repair partly through its modulatory role in the PALB2-dependent loading of BRCA2-RAD51 repair machinery at DNA breaks. Component of the BRCA1-RBBP8 complex which regulates CHEK1 activation and controls cell cycle G2/M checkpoints on DNA damage via BRCA1-mediated ubiquitination of RBBP8. Acts as a transcriptional activator
Condition(s)
Breast-ovarian cancer, familial, 1 (BROVCA1)
A condition associated with familial predisposition to cancer of the breast and ovaries. Characteristic features in affected families are an early age of onset of breast cancer (often before age 50), increased chance of bilateral cancers (cancer that develop in both breasts, or both ovaries, independently), frequent occurrence of breast cancer among men, increased incidence of tumors of other specific organs, such as the prostate.
Disease susceptibility is associated with variations affecting the gene represented in this entry. Mutations in BRCA1 are thought to be responsible for more than 80% of inherited breast-ovarian cancer.
OMIM
A common malignancy originating from breast epithelial tissue. Breast neoplasms can be distinguished by their histologic pattern. Invasive ductal carcinoma is by far the most common type. Breast cancer is etiologically and genetically heterogeneous. Important genetic factors have been indicated by familial occurrence and bilateral involvement. Mutations at more than one locus can be involved in different families or even in the same case.
Disease susceptibility is associated with variations affecting the gene represented in this entry. Mutations in BRCA1 are thought to be responsible for 45% of inherited breast cancer. Moreover, BRCA1 carriers have a 4-fold increased risk of colon cancer, whereas male carriers face a 3-fold increased risk of prostate cancer. Cells lacking BRCA1 show defects in DNA repair by homologous recombination.
OMIM
A malignant neoplasm of the pancreas. Tumors can arise from both the exocrine and endocrine portions of the pancreas, but 95% of them develop from the exocrine portion, including the ductal epithelium, acinar cells, connective tissue, and lymphatic tissue.
Disease susceptibility is associated with variations affecting the gene represented in this entry.
OMIM
A form of Fanconi anemia, a disorder affecting all bone marrow elements and resulting in anemia, leukopenia and thrombopenia. It is associated with cardiac, renal and limb malformations, dermal pigmentary changes, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage) and defective DNA repair.
Disease susceptibility is associated with variations affecting the gene represented in this entry.
OMIM
The term ovarian cancer defines malignancies originating from ovarian tissue. Although many histologic types of ovarian tumors have been described, epithelial ovarian carcinoma is the most common form. Ovarian cancers are often asymptomatic and the recognized signs and symptoms, even of late-stage disease, are vague. Consequently, most patients are diagnosed with advanced disease.
Disease susceptibility is associated with variations affecting the gene represented in this entry.
OMIM
This variant was found in the VKGL dataset.
According to this authoritative source this variant is classified as
benign.
A prediction is available for this variant, but this source takes precedence in our classification.
Helix prediction details
Notice: you have requested a prediction from a specific prediction version. This may not be the most recent prediction.
You selected predictions from version:
Helix v4.0.1
Prediction: benign
7%
The Ile1723Val mutation in the protein has been classified as
benign by our ensemble classifier system, with very high
confidence. There is a 92% agreement between all
subclassifiers.
Data quality
Data quality for this region is considered good.
This means that enhanced, deep alignments are present and there is a variety of data for the algorithm to predict from.
Assistant summary
This is an automatically generated assessment, it is not reviewed by humans and only has partial
access to the information contained in the report. Generating this may take some time.
Evolutionary pressure
Conservation
The wildtype was observed in 27.17% of the 1351 sequences analyzed.
The variant type was observed in 2.00% of observed sequences.
This residue is involved in 1 Hydrogen Bond, 5 Hydrophobic interactions.
Interaction statistics were calculated using advanced molecular optimization techniques and
may not be visible in the plain PDB file. Please download the YASARA scene to explore the interactions in more detail.